Team 6 – Cell death in host-pathogen interactions

According to the World Health Organisation (WHO), infectious diseases are still among the three leading causes of death worldwide and first in developing countries. In addition to HIV infection, which remains a health problem in poor countries, Neglected tropical diseases (NTDs) are a diverse group of communicable diseases that prevail in tropical and subtropical countries affect more than one billion people. The work of our team has been dedicated to study the mechanisms of apoptosis, which is one of the major phenotypes of programmed cell death (PCD), in the context of host-pathogen interaction. The specificity of our research lies in an upstream research aimed at clarifying the biochemical and molecular mechanisms involved in the process of PCD, in particular the contributing role of mitochondria, and a downstream research studying these mechanisms in vivo by using Non Human Primates (NHP). These models give us the opportunity to test drug therapeutic approaches and analyzed microbe persistence in deep tissues after treatment.

The proposed research program will be centered on the study of the inter-relationship between cell death, metabolism and immune response in the context of microbe infections. The specific objectives that we plan to pursue over the next 5 years will be (i) to assess the improvement of ART therapy in NHP using anti-apoptotic agent, which in turn may restore mitochondria defect and bioenergetics during HIV/SIV infection; (2) to understand how leishmania impact on mitochondria metabolism by altering innate immune response and host cell death to improve therapy for parasite eradication in deep tissues; (3) to understand the molecular basis of the release of innate cytokines, IL-1 vs IFN-during viral infections and its relationship with cell death pathways. Chronic inflammation may contribute to microbe persistence and the absence of eradication.

Permanent researchers

Jérôme Estaquier, CNRS researcher, DR-CNRS, Cell and Death in Hoste-Pathogene Interractions
jerome.estaquier@-Code to remove to avoid SPAM-u-paris.fr
Nathalie Evrard, Associate professor, MCU Université Paris Cité, Cell and Death in Hoste-Pathogene Interractions
Pierre Nioche, Associate professor, MCU Université Paris Cité, Cell and Death in Hoste-Pathogene Interractions
pierre.nioche@-Code to remove to avoid SPAM-u-paris.fr, +33 1 42 86 22 20, room R 280
Calaiselvy Soundaramourty, Université Paris Cité Technician, Cell and Death in Hoste-Pathogene Interractions
calaiselvy.Soudaramoury@-Code to remove to avoid SPAM-u-paris.fr

Support staff

Hector Adrila-Osorio, Technician, Cell and Death in Hoste-Pathogene Interractions
hector.ardila-osorio@-Code to remove to avoid SPAM-u-paris.fr, +33 1 42 86 34 64, room R294

Post docs and PhD students

Morgane Picard, PhD student, Cell and Death in Hoste-Pathogene Interractions

Journal articles

2024

ref_biblio
Adrien Corne, Florine Adolphe, Jérôme Estaquier, Sébastien Gaumer, Jean-Marc Corsi. ATF4 Signaling in HIV Infection: Viral Subversion of a Stress Response Transcription Factor. Biology, 2024, ⟨10.3390/biology13030146⟩. ⟨hal-04419778v2⟩

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Pierre Guermonprez, Pierre Nioche, Louis Renaud, Nicolas Battaglini, Sébastien Sanaur, et al.. CRISPR–Cas Systems Associated with Electrolyte-Gated Graphene-Based Transistors: How They Work and How to Combine Them. Biosensors, 2024, 14 (11), pp.541. ⟨10.3390/bios14110541⟩. ⟨hal-04792978⟩

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Lucy Kundura, Renaud Cezar, Emma Ballongue, Sonia André, Moïse Michel, et al.. Low Percentage of Perforin-Expressing NK Cells during Severe SARS-CoV-2 Infection: Consumption Rather than Primary Deficiency. Journal of Immunology, 2024, 212 (7), pp.1105 - 1112. ⟨10.4049/jimmunol.2300359⟩. ⟨hal-04748173⟩

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2023

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Byung-Kuk Yoo, Sergei Kruglik, Jean-Christophe Lambry, Isabelle Lamarre, C.S. Raman, et al.. The H-NOX protein structure adapts to different mechanisms in sensors interacting with nitric oxide. Chemical Science, 2023, 14 (31), pp.8408-8420. ⟨10.1039/d3sc01685d⟩. ⟨inserm-04241634⟩

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2022

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Sonia André, Morgane Picard, Renaud Cezar, Florence Roux-Dalvai, Aurélie Alleaume-Butaux, et al.. T cell apoptosis characterizes severe Covid-19 disease. Cell Death and Differentiation, 2022, Online ahead of print. ⟨10.1038/s41418-022-00936-x⟩. ⟨inserm-03738821⟩

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Sonia André, Marne Azarias da Silva, Morgane Picard, Aurélie Alleaume-Buteau, Lucy Kundura, et al.. Low quantity and quality of anti-spike humoral response is linked to CD4 T-cell apoptosis in COVID-19 patients. Cell Death and Disease, 2022, 13 (8), pp.741. ⟨10.1038/s41419-022-05190-0⟩. ⟨inserm-03774218⟩

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Lucy Kundura, Sandrine Gimenez, Renaud Cezar, Sonia André, Mehwish Younas, et al.. Angiotensin II induces reactive oxygen species, DNA damage, and T-cell apoptosis in severe COVID-19. Journal of Allergy and Clinical Immunology, 2022, 150 (3), pp.594-603.e2. ⟨10.1016/j.jaci.2022.06.020⟩. ⟨hal-03837641⟩

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Lucy Kundura, Renaud Cezar, Sonia André, Mauricio Campos-Mora, Claire Lozano, et al.. Low perforin expression in CD8+ T lymphocytes during the acute phase of severe SARS-CoV-2 infection predicts long COVID. Frontiers in Immunology, 2022, 13, ⟨10.3389/fimmu.2022.1029006⟩. ⟨hal-04318200⟩

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Lucie Larigot, Linh-Chi Bui, Marine de Bouvier, Ophélie Pierre, Grégory Pinon, et al.. Identification of Modulators of the C. elegans Aryl Hydrocarbon Receptor and Characterization of Transcriptomic and Metabolic AhR-1 Profiles. Antioxidants , 2022, 11 (5), pp.1030. ⟨10.3390/antiox11051030⟩. ⟨hal-03745310⟩

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Alexandre Nicolas, Julie Migraine, Jacques Dutrieux, Maud Salmona, Alexandra Tauzin, et al.. Genotypic and Phenotypic Diversity of the Replication-Competent HIV Reservoir in Treated Patients. Microbiology Spectrum, 2022, pp.e0078422. ⟨10.1128/spectrum.00784-22⟩. ⟨inserm-03736396⟩

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2021

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Jérôme Estaquier, Étienne Blanc, Xavier Coumoul. Que sait-on de l’action des perturbateurs endocriniens sur le système immunitaire ?. La Revue du Praticien Médecine Générale, 2021, 71 (7), pp.729-734. ⟨hal-03744699⟩

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Alexandra Tauzin, Armando Espinosa Ortiz, Olivia Blake, Calaiselvy Soundaramourty, Charles Joly-Beauparlant, et al.. Differential Inhibition of HIV Replication by the 12 Interferon Alpha Subtypes. Journal of Virology, 2021, 95 (15), pp.e0231120. ⟨10.1128/JVI.02311-20⟩. ⟨inserm-03451787⟩

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2020

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Sonia André, Vasco Rodrigues, Sarah Pemberton, Mireille Laforge, Yasmina Fortier, et al.. Antileishmanial Drugs Modulate IL-12 Expression and Inflammasome Activation in Primary Human Cells. Journal of Immunology, 2020, 204 (7), pp.1869-1880. ⟨10.4049/jimmunol.1900590⟩. ⟨hal-03089820⟩

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Carolina Ferreira, Inês Mesquita, Ana Margarida Barbosa, Nuno Sampaio Osório, Egídio Torrado, et al.. Glutamine supplementation improves the efficacy of miltefosine treatment for visceral leishmaniasis. PLoS Neglected Tropical Diseases, 2020, 14 (3), pp.e0008125. ⟨10.1371/journal.pntd.0008125⟩. ⟨inserm-02911722⟩

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Inês Mesquita, Carolina Ferreira, Diana Moreira, George Eduardo Gabriel Kluck, Ana Margarida Barbosa, et al.. The Absence of HIF-1α Increases Susceptibility to Leishmania donovani Infection via Activation of BNIP3/mTOR/SREBP-1c Axis. Cell Reports, 2020, 30, pp.4052 - 4064.e7. ⟨10.1016/j.celrep.2020.02.098⟩. ⟨hal-03490073⟩

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Henintsoa Rabezanahary, Julien Clain, Gina Racine, Guadalupe Andreani, Ghita Benmadid-Laktout, et al.. Early Antiretroviral Therapy Prevents Viral Infection of Monocytes and Inflammation in Simian Immunodeficiency Virus-Infected Rhesus Macaques. Journal of Virology, 2020, 94 (22), pp.e01478-20. ⟨10.1128/JVI⟩. ⟨inserm-03451855⟩

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2019

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Félicien Moukambi, Henintsoa Rabezanahary, Yasmina Fortier, Vasco Rodrigues, Julien Clain, et al.. Mucosal T follicular helper cells in SIV-infected rhesus macaques: contributing role of IL-27. Mucosal Immunology, 2019, 12 (4), pp.1038-1054. ⟨10.1038/s41385-019-0174-0⟩. ⟨hal-02400461⟩

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Félicien Moukambi, Henintsoa Rabezanahary, Yasmina Fortier, Vasco Rodrigues, Julien Clain, et al.. Mucosal T follicular helper cells in SIV-infected rhesus macaques: contributing role of IL-27. Mucosal Immunology, 2019, 12, pp.1038 - 1054. ⟨10.1038/s41385-019-0174-0⟩. ⟨hal-03091056⟩

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2018

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Mickaël Fer, Laurent Le Corre, Nicolas Pietrancosta, Nathalie Evrard-Todeschi, Samir Olatunji, et al.. Bacterial Transferase MraY, a Source of Inspiration towards New Antibiotics. Current Medicinal Chemistry, 2018, 25 (42), pp.6013-6029. ⟨10.2174/0929867325666180330095154⟩. ⟨hal-02364241⟩

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Mireille Laforge, Ricardo Silvestre, Vasco Rodrigues, Julie Garibal, Laure Campillo-Gimenez, et al.. The anti-caspase inhibitor Q-VD-OPH prevents AIDS disease progression in SIV-infected rhesus macaques. Journal of Clinical Investigation, 2018, 128 (4), pp.1627-1640. ⟨10.1172/JCI95127⟩. ⟨hal-03089829⟩

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2017

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Hasnaa Maksouri, Pham My-Chan Dang, Vasco Rodrigues, Jérôme Estaquier, Myriam Riyad, et al.. Moroccan strains of Leishmania major and Leishmania tropica differentially impact on nitric oxide production by macrophages. Parasites & Vectors, 2017, 10 (1), pp.506. ⟨10.1186/s13071-017-2401-4⟩. ⟨inserm-01625843⟩

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Maxime Melikian, Baptiste Eluard, Gildas Bertho, Véronique Baud, Nathalie Evrard-Todeschi. Model of the Interaction between the NF-κB Inhibitory Protein p100 and the E3 Ubiquitin Ligase β-TrCP based on NMR and Docking Experiments. Journal of Chemical Information and Modeling, 2017, 57 (2), pp.223-233. ⟨10.1021/acs.jcim.5b00409⟩. ⟨hal-03684765⟩

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Félicien Moukambi, Vasco Rodrigues, Yasmina Fortier, Henintsoa Rabezanahary, Chloé Borde, et al.. CD4 T Follicular Helper Cells and HIV Infection: Friends or Enemies?. Frontiers in Immunology, 2017, 8, ⟨10.3389/fimmu.2017.00135⟩. ⟨hal-03089846⟩

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2016

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M Laforge, V Rodrigues, R Silvestre, Claude Gautier, Robert Weil, et al.. NF-κB pathway controls mitochondrial dynamics. Cell Death and Differentiation, 2016, 23 (1), pp.89-98. ⟨10.1038/cdd.2015.42⟩. ⟨hal-01366797⟩

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Inês Mesquita, Patrícia Varela, Ana Belinha, Joana Gaifem, Mireille Laforge, et al.. Exploring NAD+ metabolism in host–pathogen interactions. Cellular and Molecular Life Sciences, 2016, 73 (6), pp.1225-1236. ⟨10.1007/s00018-015-2119-4⟩. ⟨hal-03090290⟩

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Inês Mesquita, Patrícia Varela, Ana Belinha, Joana Gaifem, Mireille Laforge, et al.. Exploring NAD+ metabolism in host–pathogen interactions. Cellular and Molecular Life Sciences, 2016, 73 (6), pp.1225-1236. ⟨hal-02002338⟩

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Vasco Rodrigues, Anabela Cordeiro-Da-Silva, Mireille Laforge, Ricardo Silvestre, Jérôme Estaquier. Regulation of immunity during visceral Leishmania infection. Parasites & Vectors, 2016, 9 (1), ⟨10.1186/s13071-016-1412-x⟩. ⟨hal-03090302⟩

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2015

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Diana Moreira, Vasco Rodrigues, Maria Abengozar, Luis Rivas, Eduardo Rial, et al.. Leishmania infantum Modulates Host Macrophage Mitochondrial Metabolism by Hijacking the SIRT1-AMPK Axis. PLoS Pathogens, 2015, pp.e1004684. ⟨10.1371/journal.ppat.1004684.s010⟩. ⟨inserm-01136618⟩

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Diana Moreira, Ricardo Silvestre, Anabela Cordeiro-Da-Silva, Jérôme Estaquier, Marc Foretz, et al.. AMP-activated protein kinase as a target for pathogens: friends or foes?. Current Drug Targets, 2015, pp.1-20. ⟨inserm-01171763⟩

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Félicien Moukambi, Henintsoa Rabezanahary, Vasco Rodrigues, Gina Racine, Lynda Robitaille, et al.. Early Loss of Splenic Tfh Cells in SIV-Infected Rhesus Macaques. PLoS Pathogens, 2015, 11 (12), pp.e1005287. ⟨10.1371/journal.ppat.1005287⟩. ⟨hal-03090306⟩

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2014

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Vasco Rodrigues, Anabela Cordeiro-Da-Silva, Mireille Laforge, Ali Ouaissi, Khadija Akharid, et al.. Impairment of T Cell Function in Parasitic Infections. PLoS Neglected Tropical Diseases, 2014, 8 (2), pp.e2567. ⟨10.1371/journal.pntd.0002567⟩. ⟨hal-03090313⟩

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Vasco Rodrigues, Mireille Laforge, Laure Campillo-Gimenez, Calaiselvy Soundaramourty, Ana Correia-De-Oliveira, et al.. Abortive T Follicular Helper Development Is Associated with a Defective Humoral Response in Leishmania infantum-Infected Macaques. PLoS Pathogens, 2014, 10 (4), pp.e1004096. ⟨10.1371/journal.ppat.1004096⟩. ⟨hal-03090308⟩

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2013

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Jérôme Estaquier, Vasco Rodrigues, Ricardo Silvestre, Romain Estaquier, Bernard Krust, et al.. Apoptose et Sida, une affaire d’intégration ?. Médecine/Sciences, 2013, 29 (12), pp.1094-1096. ⟨10.1051/medsci/20132912011⟩. ⟨hal-03090323⟩

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Jérôme Estaquier, John Zaunders, Mireille Laforge. HIV integrase and the swan song of the CD4 T cells?. Retrovirology, 2013, 10 (1), ⟨10.1186/1742-4690-10-149⟩. ⟨hal-03090319⟩

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2012

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Gildas Bertho, Alexey Mantsyzov, Guillaume Bouvier, Nathalie Evrard-Todeschi. Contact-based ligand-clustering approach for the identification of active compounds in virtual screening. Advances and applications in bioinformatics and chemistry, 2012, pp.61. ⟨10.2147/AABC.S30881⟩. ⟨hal-03684866⟩

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Julie Garibal, Mireille Laforge, Ricardo Silvestre, Shahul Mouhamad, Laure Campillo-Gimenez, et al.. IL-2 immunotherapy in chronically SIV-infected Rhesus Macaques.. Virology Journal, 2012, 9 (1), pp.220. ⟨10.1186/1743-422X-9-220⟩. ⟨inserm-00752492⟩

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Patricia Rada, Ana Rojo, Nathalie Evrard-Todeschi, Nadia Innamorato, Axelle Cotte, et al.. Structural and Functional Characterization of Nrf2 Degradation by the Glycogen Synthase Kinase 3/β-TrCP Axis. Molecular and Cellular Biology, 2012, 32 (17), pp.3486-3499. ⟨10.1128/MCB.00180-12⟩. ⟨hal-03684929⟩

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2011

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Mireille Laforge, Laure Campillo-Gimenez, Valérie Monceaux, Marie-Christine Cumont, Bruno Hurtrel, et al.. HIV/SIV Infection Primes Monocytes and Dendritic Cells for Apoptosis. PLoS Pathogens, 2011, 7 (6), pp.e1002087. ⟨10.1371/journal.ppat.1002087⟩. ⟨hal-03090337⟩

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Claire Séror, Marie-Thérèse Melki, Frédéric Subra, Syed Qasim Raza, Marlène Bras, et al.. Extracellular ATP acts on P2Y2 purinergic receptors to facilitate HIV-1 infection. Journal of Experimental Medicine, 2011, 208 (9), pp.1823-1834. ⟨10.1084/jem.20101805⟩. ⟨hal-02356570⟩

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2010

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Guillaume Bouvier, Nathalie Evrard-Todeschi, Jean-Pierre Girault, Gildas Bertho. Automatic clustering of docking poses in virtual screening process using self-organizing map. Bioinformatics, 2010, 26 (1), pp.53-60. ⟨10.1093/bioinformatics/btp623⟩. ⟨hal-03684971⟩

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Florence Larrous, Alireza Gholami, Shahul Mouhamad, Jérôme Estaquier, Hervé Bourhy. Two overlapping domains of a lyssavirus matrix protein that acts on different cell death pathways.. Journal of Virology, 2010, 84 (19), pp.9897-906. ⟨10.1128/JVI.00761-10⟩. ⟨pasteur-01491943⟩

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2009

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Dominika Rudnicka, Jérôme Feldmann, Françoise Porrot, Steve Wietgrefe, Stéphanie Guadagnini, et al.. Simultaneous cell-to-cell transmission of human immunodeficiency virus to multiple targets through polysynapses.. Journal of Virology, 2009, 83 (12), pp.6234-46. ⟨10.1128/JVI.00282-09⟩. ⟨pasteur-00458065⟩

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2008

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Nathalie J Arhel, Sébastien Nisole, Laetitia Carthagena, Frédéric Coutant, Philippe Souque, et al.. Lack of endogenous TRIM5alpha-mediated restriction in rhesus macaque dendritic cells.. Blood, 2008, 112 (9), pp.3772-6. ⟨10.1182/blood-2008-04-151761⟩. ⟨pasteur-00457787⟩

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M.-C. Cumont, O. Diop, B. Vaslin, C. Elbim, L Viollet, et al.. Early Divergence in Lymphoid Tissue Apoptosis between Pathogenic and Nonpathogenic Simian Immunodeficiency Virus Infections of Nonhuman Primates. Journal of Virology, 2008, 82 (3), pp.1175-1184. ⟨10.1128/jvi.00450-07⟩. ⟨pasteur-01969014⟩

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Céline Dorival, Fanny Brizzi, Jean-Daniel Lelièvre, Nathalie Sol-Foulon, Emmanuelle Six, et al.. HIV-1 Nef protein expression in human CD34(+) progenitors impairs the differentiation of an early T/NK cell precursor.. Virology, 2008, 377 (1), pp.207-15. ⟨10.1016/j.virol.2008.04.009⟩. ⟨pasteur-00293159⟩

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Nathalie Evrard-Todeschi, Julien Pons, Josyane Gharbi-Benarous, Gildas Bertho, Richard Benarous, et al.. Structure of the Complex between Phosphorylated Substrates and the SCF β-TrCP Ubiquitin Ligase Receptor: A Combined NMR, Molecular Modeling, and Docking Approach. Journal of Chemical Information and Modeling, 2008, 48 (12), pp.2350-2361. ⟨10.1021/ci800248u⟩. ⟨hal-03685021⟩

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Julien Pons, Nathalie Evrard-Todeschi, Gildas Bertho, Josyane Gharbi-Benarous, Valérie Tanchou, et al.. Transfer-NMR and Docking Studies Identify the Binding of the Peptide Derived from Activating Transcription Factor 4 to Protein Ubiquitin Ligase β-TrCP. Competition STD-NMR with β-Catenin. Biochemistry, 2008, 47 (1), pp.14-29. ⟨10.1021/bi7014212⟩. ⟨hal-03685028⟩

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2007

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Arnaud Autret, Sandra Martin-Latil, Laurence Mousson, Aurélie Wirotius, Frédéric Petit, et al.. Poliovirus induces Bax-dependent cell death mediated by c-Jun NH2-terminal kinase.. Journal of Virology, 2007, 81 (14), pp.7504-16. ⟨10.1128/JVI.02690-06⟩. ⟨pasteur-00166062⟩

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2006

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Stéphanie Beq, Marie-Thérèse Nugeyre, Raphaël Ho Tsong Fang, David Gautier, Roger Legrand, et al.. IL-7 induces immunological improvement in SIV-infected rhesus macaques under antiviral therapy.. Journal of Immunology, 2006, 176 (2), pp.914-22. ⟨10.4049/jimmunol.176.2.914⟩. ⟨pasteur-00023330⟩

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2002

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Gaël Coadou, Nathalie Evrard-Todeschi, Josyane Gharbi-Benarous, Richard Benarous, Jean-Pierre J.-P. Girault. HIV-1 encoded virus protein U (Vpu) solution structure of the 41–62 hydrophilic region containing the phosphorylated sites Ser52 and Ser56. International Journal of Biological Macromolecules, 2002, 30 (1), pp.23-40. ⟨10.1016/s0141-8130(01)00184-2⟩. ⟨hal-02356291⟩

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1998

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Nathalie Evrard-Todeschi, Josyane Gharbi-Benarous, Valéry Larue, Jean-Pierre Girault. Predictive Study by Molecular Modeling To Promote Specific Probes of Glutamate Receptors, Using Methylated Cyclic Glutamic Acid Derivatives ( trans - and cis -ACPD). Comparison with Specific Agonists. Journal of Chemical Information and Computer Sciences, 1998, 38 (4), pp.742-760. ⟨10.1021/ci9802023⟩. ⟨hal-02371099⟩

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1995

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Valéry Larue, Josyane Gharbi-Benarous, Nathalie Evrard-Todeschi, Francine C. Acher, Robert Azerad, et al.. ACPD Ligands for glutamic receptors: Conformational analysis by NMR spectroscopy and molecular dynamics. Simulation in water of glutamic acid analogues containing a cyclopentane ring.. Journal de Chimie Physique, 1995, 92, pp.1809-1812. ⟨hal-02865157⟩

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Conference papers

2024

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Benoît Piro, Pierre Guermonprez, Louis Renaud, Pierre Nioche, Eric Krejci, et al.. An Electrolyte-Gated Transistor combined with CRISPR/Cas13a for RNA detection. MADICA 2024, APES-ATIS, Nov 2024, MONASTIR, Tunisia. ⟨hal-04804310⟩

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Book sections

2018

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Cynthia Soultawi, Yasmina Fortier, Calaiselvy Soundaramourty, Jérôme Estaquier, Mireille Laforge. Mitochondrial Bioenergetics and Dynamics During Infection. Metabolic Interaction in Infection, pp.221-233, 2018, ⟨10.1007/978-3-319-74932-7_5⟩. ⟨hal-03089840⟩

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2016

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Inês Mesquita, Diana Moreira, Belém Sampaio-Marques, Mireille Laforge, Anabela Cordeiro-Da-Silva, et al.. AMPK in Pathogens. Exp Suppl Exp Suppl Exp Suppl Exp Suppl, pp.287-323, 2016, ⟨10.1007/978-3-319-43589-3_12⟩. ⟨hal-03090299⟩

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